Phylogenetic Modeling Publications

McTavish, Emily Jane, Luna Luisa Sanchez Reyes, and Mark T Holder. OpenTree: A Python package for Accessing and Analyzing data from the Open Tree of Life. Systematic Biology, 2021.

DOI 10.1093/sysbio/syab033

Sukumaran, Jeet, Mark T. Holder, and L. Lacey Knowles. Incorporating the speciation process into species delimitation. PLOS Computational Biology, 17(5):1–19, 2021.

DOI 10.1371/journal/pcbi.1008924

Redelings, Benjamin D. and Mark T. Holder. A supertree pipeline for summarizing phylogenetic and taxonomic information for millions of species. PeerJ, 5:e3058, 2017.

DOI 10.7717/peerj.3058

More publications can be found our Google Scholar pages: